species:   Rhsol
pid:       PID0525
parent:    Rhi-milR-123
paralog:   
locus:     KB319500.1:567-662
matures:   ['UGAAAAAGGAAGCGUGCUGCA', 'UGGCACGGCAUCUUGGCAUA']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB319500.1:567-662

3 out of bounds
24 alignments
24 proper strand
12 stranded perfect matches

 ***********************                                                   *********************
ACAUGUGAAAAAGGAAGCGUGCUGCAGAUUGCGCUGGAGCGUGGAUUUCUCCUAAGCGCACUUGGCACAGUAACUUGGCACGGCAUCUUGGCAUAA
...((((....((((.((((((((...((((.(((((.(((((((....)))...))))..))))).))))....)))))).)).))))..)))).
-----UGAAAAAGGAAGCGUGCUGCA---------------------------------------------------------------------- l=21 a=1 c
---------------------------------------------------------------------------UGGCACGGCAUCUUGGCAUA- l=20 a=0 c*
---UGUGAAAAAGGAAGCGUGCUG------------------------------------------------------------------------ l=21 a=4 ma
-----------------------------------------------------------------------------GCACGGCAUCUUGGCAUAA l=19 a=0 ma*

-------------------------------------------------------------------------CUUGGCACGGCAUCUUGGCA--- l=20 a=1 
------------GGAAGCGUGCUGCAGAUUGCG--------------------------------------------------------------- l=21 a=1 
-----UGAAAAAGGAAGCGUGCUG------------------------------------------------------------------------ l=19 a=1 
-----UGAAAAAGGAAGCGUGCUGCA---------------------------------------------------------------------- l=21 a=1 (c)
-----UGAAAAAaGAAGCGUGCUGCA---------------------------------------------------------------------- l=21 a=1 
-----UGAAAAAGGAAGCGUGCUGuA---------------------------------------------------------------------- l=21 a=1 
----GgGAAAAAGGAAGCGUGCUGCA---------------------------------------------------------------------- l=22 a=1 
---UGUGAAAAAGGAAGCGUGCUG------------------------------------------------------------------------ l=21 a=4 (ma)
---UGgGAAAAAGGAAGCGUGCUG------------------------------------------------------------------------ l=21 a=1 
---UGgGAAAAAGGAAGCGUGCUGC----------------------------------------------------------------------- l=22 a=2 
---UGUGAAAAAGGAAGCGUGCUGC----------------------------------------------------------------------- l=22 a=1 
---UGUGAAAAAGGAAGCGUGCUGg----------------------------------------------------------------------- l=22 a=1 
---UGgGAAAAAGGAAGCGUGCUGCA---------------------------------------------------------------------- l=23 a=3 
---UGUGAAAAAGGAAGCGUGCUGCg---------------------------------------------------------------------- l=23 a=1 
--AUGUGAAAAAGGAAGCGUGCUGC----------------------------------------------------------------------- l=23 a=1 
-CAUGUGAAAAAGGAAGCGUGCUGCg---------------------------------------------------------------------- l=25 a=1 
-CAUGUGAAAAAGGAAGCGUGCUGCA---------------------------------------------------------------------- l=25 a=2 

mb-01011
ax-1011011
ku-01
ss-111111101100
fn-111
